Preliminary schedule:

Day 1:

18:00 – 19:30 – Arrival and Registration

19:30 – 20:00 – Opening (Branka Bernard)

20:00 – Dinner / Welcome party

Day 2: 

8:00 – 9:00 - Breakfast

9:30 – 11:00 Introduction to genomics and next-generation sequencing

11:00 – 11:30 – Coffee break

11:30 – 13:00 – Next generation sequencing data repositories

13:00 – 14:00 - Lunch

14:00 – 15:30 – Genome browsers and genome annotations / part 1

15:30 – 16:00 Coffee break

16:00 – 17:30 – Genome browsers and genome annotations / part 2

17:30 – Free time

Day 3: 

8:00 – 9:00 - Breakfast

9:30 – 11:00 – Introduction to Galaxy

11:00 – 11:30 – Coffee break

11:30 – 13:00 – Galaxy Tools and Workflows

13:00 – 14:00 - Lunch

14:00 – 15:30 - Use and misuse of statistics: How to design your experiment

15:30 – 16:00 Coffee break

16:00 – 17:30 – The Genomic Hyperbrowser: Statistical analysis of genomic tracks

17:30 – Free time

Day 4: 

8:00 – 9:00 - Breakfast

9:30 – 11:00 – Basic concepts of RNA-seq data analysis

11:00 – 11:30 – Coffee break

11:30 – 13:00 - Data analysis in Galaxy: Mapping and quality control of RNA-seq data

13:00 – 14:00 - Lunch

14:00 – 15:30 - Data analysis in Galaxy: Differential expression analysis

15:30 – 16:00 Coffee break

16:00 – 17:30 – Data analysis in Galaxy: Interpretation and visualization of analysis results

18:30 – Guided City tour and Dinner in town at 20:00

Day 5: 

8:00 – 9:00 - Breakfast

9:30 – 12:00 - Participant presentations of practical work

12:00 – 12:30 – Coffee break

12:30 – 14:00 - Q&A session

14:00 – 15:00 - Lunch

15:00 – Departure